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Once this is done, you'll need to setup your environment to use Spack, our cluster-wide package manager. This is described here: Spack

Note, we now have a new Spack environment at /software/spack/centos7/share/spack/setup-env.sh so source that file and do not use the older one.

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Relion-specific Environment Setup

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# report whether relion crashes
# remove particles from scratch
# if it crashes
if [ $? -eq 0 ]
  then
     echo -e "$SLURM_JOB_ID exited successfully"
  else
     user=$SLURM_JOB_USER
     MY_TMP_DIR=/scratchLocal/${user}_${SLURM_JOB_ID}
     echo -e "$SLURM_JOB_ID failed so cleaning up $MY_TMP_DIR"
     rm -rf $MY_TMP_DIR
fi

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