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Installation
SCU - BRB Cluster
To connect to the SCU - BRB cluster, you must be connected to the WCM VPN service
Configure Local SSH Config File
Configure your ~/.ssh/config file on your local workstation to properly connect to the internal node that will run your Jupyter Notebook:
Replace MY_CWID, with your CWID:
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Host scu-node*
user MY_CWID
ProxyCommand ssh -W %h:%p scu-login02
Host scu-login02
Hostname scu-login02.med.cornell.edu
user MY_CWID
ServerAliveInterval 60
TCPKeepAlive yes |
Reserve session on node
Jupyter-notebook can be installed from within a node. To reserve an interactive session on a node, the following commands can be run:
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More slurm information can be found here:
Perform jupyter-notebook installation
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[rma3001@scu-node001 ~]$ conda create -n jupyter-notebook [rma3001@scu-node001 ~]$ conda activate jupyter-notebook [rma3001@scu-node001 ~]$ conda install -c anaconda jupyter |
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Connecting to Jupyter Notebook
Prerequisite
Configure Local SSH Config File
Configure your ~/.ssh/config file on your local workstation to properly connect to the internal node that will run your Jupyter Notebook:
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Host scu-node*
user MY_CWID
ProxyCommand ssh -W %h:%p scu-login02
Host scu-login02
Hostname scu-login02.med.cornell.edu
user MY_CWID
ServerAliveInterval 60
TCPKeepAlive yes |
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For seamless access to the cluster and Jupyter Notebooks, ensure your SSH Keys are configured |
Run Jupyter Notebook
BRB
Jupyter notebook can be started through the following command:
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Keep track of the http://127.0.0.1:port/?token link. This will be needed once the SSH connection is established.
For Curie (Greenberg) change --port=8959
From another terminal
ssh -o ProxyCommand="ssh -W %h:%p userid@aphrodite.med.cornell.edu" -L localhost:8959:node159.panda.pbtech:8959userid@node159.panda.pbtech
SCU - Cluster Connection
From within a different terminal, edit the ~/.ssh/config file on your local workstation to include the following, replace MY_CWID, with your CWID:
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On your local machine’s browser, enter the token link that was outputted when Jupyter notebook was run, beginning with http://127.0.0.1:port/?token=…
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Contact
Contact scu@med.cornell.edu if you have any questions or if any issues are encountered.
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