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Cluster nodes are managed through Slurm. Accessing and running jobs on login nodes or by ssh’ing directly to a node is Strictly forbidden.
In-depth SCU documentation on Slurm can be found here: Using Slurm.
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For instructions on how to craft a batch submission file or how to access a node with X forwarding support, please view our full documentation here: Using Slurm
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Athena Notice
The filesystem accessible from the scu-login gateways, as well as scu-node* nodes, will have access to a filesystem that is named athena; however, this filesystem is separate and distinct from the athena that is accessible from Aphrodite, Pascal, Curie, etc. This was done to allow easier migrations and preserve paths and filesystem structure from one cluster to the other. Please consider this when managing data between the two clusters.
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Softwares and Programs
Spack
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To load Relion (version 3.1.0 - GPU-optimized) enter module load relion/3.1.0/gpu. View module instructions above for more information about loading and querying modules.
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