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srun -n1 --pty --x11 --partition=cryo-cpu --mem=8G bash -l
Relion versions available
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Which version of Relion you use (2.0.3, 2.1, or 3.0_beta) is more of a scientific question than technical one; however, in general, most users seem to be using 3.0_beta, unless they have legacy projects that were started with an older version (consult with PI if you have questions about this).
After the specific version of Relion is selected, selecting for the other installation parameters is straightforward:
To run relion3.0_beta on the cluster (or reserved nodes) with GPUs (P100s):
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spack load -r relion@3.0_beta+cuda purpose=cluster cuda_arch=60 |
To run relion3.0_beta on the cluster (or reserved nodes) with GPUs (V100s):
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spack load -r relion@3.0_beta+cuda purpose=cluster cuda_arch=70 |
To load Relion 3 beta the cluster (or reserved nodes) on CPU-only nodes (i.e. no GPUs):
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spack load -r relion@3.0_beta~cuda purpose=cluster |
To run relion3.0_beta on a desktop/workstation with GPUs (P100s):
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spack load -r relion@3.0_beta +cuda cuda_arch=60 purpose=desktop |
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