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After editing your ~/.bashrc, log out of curie.
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Launching the Relion GUI
Log on to curie, with X11, and request an interactive node
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ssh -Y pascal # if off campus, use ssh -Y pascal.med.cornell.edu ssh -Y curie |
The -Y enables the use of the GUI.
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To request an interactive session, use this command (for more information, see: Using Slurm)
srun -n1 --pty --x11 --partition=cryo-cpu --mem=8G bash -l
Relion versions available
To see what's available, use this command (for more information on spack command, see Spack):
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Do NOT try to run a +cuda installation of Relion on a CPU-only node–this will result in errors, as these versions of Relion expect CUDA to be present (which it is not on the CPU-only nodes). |
AndFinally, we have versions of Relion that are specific to different GPU models:
- P100,
cuda_arch=60V100, cuda_arch=7060# For use on nodes with Nvidia P100s cuda_arch=70# For use on nodes with Nvidia V100s
What Relion version should I use?!?
Which version of Relion you use (2.0.3, 2.1, or 3.0_beta) is more of a scientific question than technical one; however, in general, most users seem to be using 3.0_beta, unless they have legacy projects that were started with an older version.
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