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Modify the ~/.ssh/config in your local workstation to include the following entries:
Code Block language none Host * StrictHostKeyChecking no Host scu-login02 HostName scu-login02.med.cornell.edu ServerAliveInterval 60 TCPKeepAlive yes
Connect to the WCM VPN Network
Run the following from the terminal (Replace port with your lab’s specific port number herebelow):
Code Block ssh node164 -L port:localhost:port
Enter http://localhost:port within your local browser and authenticate using the credentials found in your cluster ~/cryo_creds file.
Connection - Windows
Follow the SCU Windows SSH Forwarding guide found here (Update the port numbers):
Enter http://localhost:port within your local browser and authenticate using the credentials found in your cluster ~/cryo_creds file.
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Modify the ~/.ssh/config in your local workstation to include the following entries:
Code Block language none Host * StrictHostKeyChecking no Host pascal HostName pascal.med.cornell.edu ServerAliveInterval 60 TCPKeepAlive yes Host node164 Hostname node164.panda.pbtech ServerAliveInterval 60 TCPKeepAlive yes ProxyCommand ssh -A -W %h:%p pascal.med.cornell.edu
Run the following from the terminal (Replace port with your lab’s specific port number here):
Code Block ssh node164 -L port:localhost:port
Enter http://localhost:port within your local browser and authenticate using the credentials found in your cluster ~/cryo_creds file.
Connection - Windows
Follow the SCU Windows SSH Forwarding guide found here (Update the port numbers):
Enter http://localhost:port within your local browser and authenticate using the credentials found in your cluster ~/cryo_creds file.
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It’s clear for most jobs whether they require GPUs or not (obviously, if the calculation has an input for the # GPUs available, then it needs GPUs!). However, some are ambiguous. We recommend you assume that the calculation does not require GPUs (if it’s not clear) and submit to `cryo-cpu`. If the calculation does require GPUs, it will almost immediately error out complaining about `pycuda`—if you see this, just clear the job and submit to a GPU-queue. If trial-and-error is not your thing, I’m sure the cryoSPARC documentation describes this in detail for each calculation
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Current Lab Ports
Anchor | ||||
---|---|---|---|---|
|
Xin-Yun Huang | 39000 |
Crina Nimigean | 39100 |
Alessio Accardi | 39200 |
Olga Boudker | 39300 |
Paul Riegelhaupt | 39400 |
Joel Meyerson | 39500 |
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Contact
Please contact SCU@med.cornell.edu with any questions or concerns
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